If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ), 'gf_id' => 'HOM05D000650', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000650' ), 'data_identifier' => 'HOM05D000650', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000650', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '875', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16250' => 'bna', 'A02p19430' => 'bna', 'A02p42350' => 'bna', 'A03p16650' => 'bna', 'A03p55650' => 'bna', 'A05p03210' => 'bna', 'A07p36120' => 'bna', 'A07p40320' => 'bna', 'A07p40330' => 'bna', 'Aa31LG11G1140' => 'aar', 'Aa31LG1G24570' => 'aar', 'Aa31LG4G11080' => 'aar', 'Aa31LG4G4780' => 'aar', 'Aa31LG7G10820' => 'aar', 'Aa31LG9G7120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3741' => 'aag', 'Actinidia00314' => 'ach', 'Actinidia00315' => 'ach', 'Actinidia02402' => 'ach', 'Actinidia04905' => 'ach', 'Actinidia07836' => 'ach', 'Actinidia08887' => 'ach', 'Actinidia10270' => 'ach', 'Actinidia11194' => 'ach', 'Actinidia18337' => 'ach', 'Actinidia19250' => 'ach', 'Actinidia19868' => 'ach', 'Actinidia25559' => 'ach', 'Actinidia32523' => 'ach', 'Actinidia33565' => 'ach', 'Actinidia36822' => 'ach', 'Actinidia37638' => 'ach', 'Ah.01g003380' => 'amhyb', 'Ah.02g113350' => 'amhyb', 'AL2G28870' => 'aly', 'AL2G34400' => 'aly', 'AL4G41430' => 'aly', 'AL7G28240' => 'aly', 'AL8G24880' => 'aly', 'AL8G39380' => 'aly', 'Aqoxy1G01897' => 'aox', 'Aqoxy1G01899' => 'aox', 'Aqoxy1G01957' => 'aox', 'Aqoxy1G02762' => 'aox', 'Aqoxy1G03393' => 'aox', 'Aqoxy1G03422' => 'aox', 'Aqoxy1G03567' => 'aox', 'Aqoxy2G00457' => 'aox', 'Aqoxy2G01645' => 'aox', 'Aqoxy2G01822' => 'aox', 'Aqoxy2G01882' => 'aox', 'Aqoxy2G01888' => 'aox', 'Aqoxy2G01933' => 'aox', 'Aqoxy2G02083' => 'aox', 'Aqoxy2G02114' => 'aox', 'Aqoxy2G02995' => 'aox', 'Aqoxy3G00681' => 'aox', 'Aqoxy3G01628' => 'aox', 'Aqoxy3G01695' => 'aox', 'Aqoxy3G01979' => 'aox', 'Aqoxy3G02414' => 'aox', 'Aqoxy3G03349' => 'aox', 'Aqoxy3G03539' => 'aox', 'Aqoxy4G00320' => 'aox', 'Aqoxy4G00931' => 'aox', 'Aqoxy4G01040' => 'aox', 'Aqoxy4G01041' => 'aox', 'Aqoxy4G01321' => 'aox', 'Aqoxy4G01580' => 'aox', 'Aqoxy4G01699' => 'aox', 'Aqoxy4G02475' => 'aox', 'Aqoxy5G02277' => 'aox', 'Aqoxy5G02742' => 'aox', 'Aqoxy5G02990' => 'aox', 'Aqoxy5G03287' => 'aox', 'Aqoxy6G00817_Aqoxy6G00818' => 'aox', 'Aqoxy6G00819' => 'aox', 'Aqoxy6G01714' => 'aox', 'Aqoxy7G01573' => 'aox', 'Aqoxy7G01645' => 'aox', 'Aqoxy7G01866' => 'aox', 'Aqoxy7G02207' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14KYNF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5R4KAC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BQY73P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BUGF9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CR26SM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB301H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZY3XY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQ4Z9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JCMQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K42P2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9WZHD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH270E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0K7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKF900' => 'arhy', 'AT1G69700' => 'ath', 'AT1G74520' => 'ath', 'AT2G42820' => 'ath', 'AT4G24960' => 'ath', 'AT5G50720' => 'ath', 'AT5G62490' => 'ath', 'ATR0564G348' => 'atr', 'ATR0582G315' => 'atr', 'ATR0602G138' => 'atr', 'Atru.chr11.1819' => 'acertr', 'Atru.chr13.546' => 'acertr', 'Atru.chr13.983' => 'acertr', 'Atru.chr6.1306' => 'acertr', 'Atru.chr6.1308' => 'acertr', 'Atru.chr6.1309' => 'acertr', 'Atru.chr6.1473' => 'acertr', 'Atru.chr6.1841' => 'acertr', 'Atru.chr9.2270' => 'acertr', 'Atru.chr9.2276' => 'acertr', 'AUR62008386' => 'cqu', 'AUR62014986' => 'cqu', 'AUR62021712' => 'cqu', 'AUR62028802' => 'cqu', 'AUR62029134' => 'cqu', 'AUR62029570' => 'cqu', 'AUR62038842' => 'cqu', 'BcaB01g04146' => 'bca', 'BcaB03g14747' => 'bca', 'BcaB05g24475' => 'bca', 'BcaB05g24858' => 'bca', 'BcaB06g29265' => 'bca', 'BcaB07g29841' => 'bca', 'BcaC01g02480' => 'bca', 'BcaC01g06044' => 'bca', 'BcaC03g15110' => 'bca', 'BcaC03g15512' => 'bca', 'BcaC03g17554' => 'bca', 'BcaC06g32846' => 'bca', 'BcaC08g46417' => 'bca', 'BcaC08g46885' => 'bca', 'BcaC09g50828' => 'bca', 'BcaNung07129' => 'bca', 'BolC1t01953H' => 'bol', 'BolC1t01954H' => 'bol', 'BolC2t08743H' => 'bol', 'BolC2t09229H' => 'bol', 'BolC2t11581H' => 'bol', 'BolC2t12280H' => 'bol', 'BolC3t14339H' => 'bol', 'BolC3t18690H' => 'bol', 'BolC4t22022H' => 'bol', 'BolC4t28492H' => 'bol', 'BolC6t39423H' => 'bol', 'BolC7t45879H' => 'bol', 'BolSC101t60213H' => 'bol', 'BraA01t01561Z' => 'bra', 'BraA01t01562Z' => 'bra', 'BraA02t06982Z' => 'bra', 'BraA02t09165Z' => 'bra', 'BraA03t10951Z' => 'bra', 'BraA03t14632Z' => 'bra', 'BraA05t19311Z' => 'bra', 'BraA06t25870Z' => 'bra', 'BraA07t31188Z' => 'bra', 'C01p20240' => 'bna', 'C02p26710' => 'bna', 'C02p31950' => 'bna', 'C02p62230' => 'bna', 'C03p19590' => 'bna', 'C03p64360' => 'bna', 'C04p03860' => 'bna', 'C06p43480' => 'bna', 'C07p53890' => 'bna', 'CAN.G1191.7' => 'can', 'CAN.G1207.3' => 'can', 'CAN.G1813.4' => 'can', 'CAN.G193.7' => 'can', 'CAN.G407.115' => 'can', 'CAN.G504.82' => 'can', 'CAN.G525.18' => 'can', 'CAN.G531.4' => 'can', 'CAN.G65.120' => 'can', 'CAN.G732.22' => 'can', 'CAN.G760.7' => 'can', 'CANSAT25G0331' => 'cansat', 'CANSAT54G0504' => 'cansat', 'CANSAT54G0545' => 'cansat', 'CANSAT54G2685' => 'cansat', 'CANSAT64G1820' => 'cansat', 'CANSAT78G1891' => 'cansat', 'CANSAT80G1082' => 'cansat', 'CANSAT80G2270' => 'cansat', 'CARHR062690' => 'chi', 'CARHR067800' => 'chi', 'CARHR137900' => 'chi', 'CARHR232360' => 'chi', 'CARHR257600' => 'chi', 'CARHR276280' => 'chi', 'Carub.0002s1636' => 'cru', 'Carub.0002s2132' => 'cru', 'Carub.0004s2526' => 'cru', 'Carub.0007s1610' => 'cru', 'Carub.0008s1072' => 'cru', 'Carub.0008s2315' => 'cru', 'Ca_04770_v3' => 'car', 'Ca_14615_v3' => 'car', 'Ca_16060_v3' => 'car', 'Ca_18401_v3' => 'car', 'Ca_21830_v3' => 'car', 'Cc04_g09860' => 'ccan', 'Cc04_g16940' => 'ccan', 'Cc05_g09230' => 'ccan', 'Cc11_g13160' => 'ccan', 'CDE02G1187' => 'cde', 'CDE02G1990' => 'cde', 'CDE04G2440' => 'cde', 'CDE05G0299' => 'cde', 'CDE08G0215' => 'cde', 'Cfa008998' => 'cfa', 'Cfa018769' => 'cfa', 'Cfa018961' => 'cfa', 'Ciclev10006951m.g' => 'ccl', 'Ciclev10022553m.g' => 'ccl', 'Ciclev10032960m.g' => 'ccl', 'Ciclev10033011m.g' => 'ccl', 'Ciclev10033698m.g' => 'ccl', 'CiPaw.03G188300' => 'cil', 'CiPaw.05G136900' => 'cil', 'CiPaw.11G005000' => 'cil', 'CiPaw.11G042600' => 'cil', 'CiPaw.12G004600' => 'cil', 'CiPaw.12G014200' => 'cil', 'ClCG02G018340' => 'cla', 'ClCG04G012390' => 'cla', 'ClCG05G024380' => 'cla', 'ClCG06G016280' => 'cla', 'ClCG06G018060' => 'cla', 'ClCG09G022310' => 'cla', 'COL.COLO4_22886' => 'col', 'COL.COLO4_32414' => 'col', 'COL.COLO4_32415' => 'col', 'COL.COLO4_33722' => 'col', 'COL.COLO4_35274' => 'col', 'COL.COLO4_36219' => 'col', 'Cpa.g.sc128.5' => 'cpa', 'Cpa.g.sc1474.1' => 'cpa', 'Cpa.g.sc20.26' => 'cpa', 'Cpa.g.sc21.40' => 'cpa', 'Cpa.g.sc4.166' => 'cpa', 'Cpa.g.sc50.72' => 'cpa', 'Cre03.g176930' => 'cre', 'Cre03.g177500' => 'cre', 'Cre17.g696850' => 'cre', 'CsaV3_1G000410' => 'csa', 'CsaV3_1G002250' => 'csa', 'CsaV3_1G005320' => 'csa', 'CsaV3_5G032580' => 'csa', 'CsaV3_6G015760' => 'csa', 'CsaV3_6G037980' => 'csa', 'CSS0007118' => 'camsi', 'CSS0007852' => 'camsi', 'CSS0008091' => 'camsi', 'CSS0010126' => 'camsi', 'CSS0015440' => 'camsi', 'CSS0029976' => 'camsi', 'CSS0032885' => 'camsi', 'CSS0033669' => 'camsi', 'CSS0038870' => 'camsi', 'CSS0041479' => 'camsi', 'CSS0042971' => 'camsi', 'CSS0045659' => 'camsi', 'DCAR_001849' => 'dca', 'DCAR_009792' => 'dca', 'DCAR_016375' => 'dca', 'DCAR_016538' => 'dca', 'DCAR_020029' => 'dca', 'DCAR_021527' => 'dca', 'DCAR_021636' => 'dca', 'DCAR_029285' => 'dca', 'Dinv06482' => 'din', 'Dinv08987' => 'din', 'Dinv08988' => 'din', 'Dinv08989' => 'din', 'Dinv11192' => 'din', 'Dinv16632' => 'din', 'Dinv19945' => 'din', 'Dinv24137' => 'din', 'Dinv24138' => 'din', 'Dinv38691' => 'din', 'Dinv42596' => 'din', 'Duzib041G0043' => 'dzi', 'Duzib068G0550' => 'dzi', 'Duzib084G0496' => 'dzi', 'Duzib084G1407' => 'dzi', 'Duzib116G0074' => 'dzi', 'Duzib132G0086' => 'dzi', 'Duzib147G1118' => 'dzi', 'Duzib205G0931' => 'dzi', 'Duzib205G1756' => 'dzi', 'Duzib248G0259' => 'dzi', 'Duzib248G1171' => 'dzi', 'ECA232G0964' => 'eca', 'ECA232G2817' => 'eca', 'ECA233G0934' => 'eca', 'ECA246G1204' => 'eca', 'EL10Ac5g10980' => 'bvu', 'EL10Ac6g13183' => 'bvu', 'EL10Ac9g20687' => 'bvu', 'EL10Ac9g22653' => 'bvu', 'Eucgr.A01961' => 'egr', 'Eucgr.B00091' => 'egr', 'Eucgr.B00092' => 'egr', 'Eucgr.B00093' => 'egr', 'Eucgr.B00097' => 'egr', 'Eucgr.B00469' => 'egr', 'Eucgr.B03426' => 'egr', 'Eucgr.K02705' => 'egr', 'Eucgr.L01507' => 'egr', 'Eucgr.L01508' => 'egr', 'FAN02G2475' => 'fan', 'FAN02G4499' => 'fan', 'FAN04G0643' => 'fan', 'FAN04G0775' => 'fan', 'FAN04G3193' => 'fan', 'FAN07G1767' => 'fan', 'FAN08G1441' => 'fan', 'FAN08G2318' => 'fan', 'FAN09G2528' => 'fan', 'FAN12G1381' => 'fan', 'FAN13G2424' => 'fan', 'FAN14G4052' => 'fan', 'FAN15G2135' => 'fan', 'FAN17G0095' => 'fan', 'FAN17G0372' => 'fan', 'FAN18G4271' => 'fan', 'FAN20G2101' => 'fan', 'FAN22G0374' => 'fan', 'FAN24G2673' => 'fan', 'FAN24G3507' => 'fan', 'FAN27G0840' => 'fan', 'FvH4_2g11420' => 'fve', 'FvH4_2g11450' => 'fve', 'FvH4_4g31530' => 'fve', 'FvH4_5g08670' => 'fve', 'FvH4_5g15180' => 'fve', 'FvH4_5g34301' => 'fve', 'FvH4_5g34302' => 'fve', 'FvH4_6g35430' => 'fve', 'FvH4_6g37830' => 'fve', 'FvH4_6g37840' => 'fve', 'FvH4_7g26522' => 'fve', 'Glyma.01G045400' => 'gma', 'Glyma.02G105800' => 'gma', 'Glyma.02G215900' => 'gma', 'Glyma.02G287900' => 'gma', 'Glyma.04G171200' => 'gma', 'Glyma.04G197600' => 'gma', 'Glyma.05G027700' => 'gma', 'Glyma.06G167900' => 'gma', 'Glyma.06G192700' => 'gma', 'Glyma.08G010900' => 'gma', 'Glyma.08G066700' => 'gma', 'Glyma.08G299300' => 'gma', 'Glyma.08G310600' => 'gma', 'Glyma.10G128151' => 'gma', 'Glyma.14G027000' => 'gma', 'Glyma.14G096400' => 'gma', 'Glyma.14G182900' => 'gma', 'Glyma.17G098800' => 'gma', 'Glyma.18G105400' => 'gma', 'Glyma.18G121600' => 'gma', 'Gohir.A03G065700' => 'ghi', 'Gohir.A03G178000' => 'ghi', 'Gohir.A06G031000' => 'ghi', 'Gohir.A07G049600' => 'ghi', 'Gohir.A09G006900' => 'ghi', 'Gohir.A12G176400' => 'ghi', 'Gohir.A12G190700' => 'ghi', 'Gohir.A13G073600' => 'ghi', 'Gohir.D02G201700' => 'ghi', 'Gohir.D03G092200' => 'ghi', 'Gohir.D06G030200' => 'ghi', 'Gohir.D07G053900' => 'ghi', 'Gohir.D09G006000' => 'ghi', 'Gohir.D12G179240' => 'ghi', 'Gohir.D13G073600' => 'ghi', 'Gorai.001G057000' => 'gra', 'Gorai.003G095800' => 'gra', 'Gorai.005G226700' => 'gra', 'Gorai.006G007600' => 'gra', 'Gorai.008G192100' => 'gra', 'Gorai.008G207600' => 'gra', 'Gorai.010G033200' => 'gra', 'Gorai.013G084300' => 'gra', 'GSVIVG01000320001' => 'vvi', 'GSVIVG01000324001' => 'vvi', 'GSVIVG01000325001' => 'vvi', 'GSVIVG01000327001' => 'vvi', 'GSVIVG01000328001' => 'vvi', 'GSVIVG01000330001' => 'vvi', 'GSVIVG01000331001' => 'vvi', 'GSVIVG01000808001' => 'vvi', 'GSVIVG01008026001' => 'vvi', 'GSVIVG01008576001' => 'vvi', 'GSVIVG01009203001' => 'vvi', 'GSVIVG01012543001' => 'vvi', 'GSVIVG01012547001' => 'vvi', 'GSVIVG01012549001' => 'vvi', 'GSVIVG01020012001' => 'vvi', 'GSVIVG01038510001' => 'vvi', 'HanXRQChr04g0103091' => 'han', 'HanXRQChr05g0132371' => 'han', 'HanXRQChr08g0236321' => 'han', 'HanXRQChr09g0270741' => 'han', 'HanXRQChr09g0273421' => 'han', 'HanXRQChr10g0278191' => 'han', 'HanXRQChr13g0388131' => 'han', 'HanXRQChr16g0502881' => 'han', 'HanXRQChr17g0545471' => 'han', 'Haze_01707' => 'cav', 'Haze_01760' => 'cav', 'Haze_01762' => 'cav', 'Haze_01801' => 'cav', 'Haze_01803' => 'cav', 'Haze_01807' => 'cav', 'Haze_01818' => 'cav', 'Haze_07171' => 'cav', 'Haze_07342' => 'cav', 'Haze_10323' => 'cav', 'Haze_10689' => 'cav', 'Haze_10691' => 'cav', 'Haze_10696' => 'cav', 'Haze_10697' => 'cav', 'Haze_10698' => 'cav', 'Haze_12027' => 'cav', 'Haze_13479' => 'cav', 'Hma1.2p1_0036F.1_g023720' => 'hma', 'Hma1.2p1_0104F.1_g050050' => 'hma', 'Hma1.2p1_0213F.1_g090400' => 'hma', 'Hma1.2p1_0265F.1_g106700' => 'hma', 'Hma1.2p1_0735F.1_g210465' => 'hma', 'Hma1.2p1_0735F.1_g210480' => 'hma', 'HPP92_009803' => 'vpl', 'HPP92_011777' => 'vpl', 'HPP92_016857' => 'vpl', 'HPP92_016913' => 'vpl', 'Hund02457' => 'sun', 'Hund02660' => 'sun', 'Hund10125' => 'sun', 'Hund21951' => 'sun', 'Lalb_Chr04g0248681' => 'lal', 'Lalb_Chr07g0183551' => 'lal', 'Lalb_Chr10g0098171' => 'lal', 'Lalb_Chr10g0102781' => 'lal', 'Lalb_Chr10g0106781' => 'lal', 'Lalb_Chr12g0196831' => 'lal', 'Lalb_Chr12g0202311' => 'lal', 'Lalb_Chr16g0383011' => 'lal', 'Lalb_Chr17g0340571' => 'lal', 'Lalb_Chr23g0273661' => 'lal', 'Lalb_Chr23g0273671' => 'lal', 'Lj1A585G42' => 'lonja', 'Lj1g0010339' => 'lja', 'Lj1g0015909' => 'lja', 'Lj2g0016665' => 'lja', 'Lj3C1039T1' => 'lonja', 'Lj4A86T98' => 'lonja', 'Lj4g0004005' => 'lja', 'Lj4g0012325' => 'lja', 'Lj4g0014144' => 'lja', 'Lj4g0018033' => 'lja', 'Lj4g0020146' => 'lja', 'Lj4g0020470' => 'lja', 'Lj5A112T66' => 'lonja', 'Lj5A228G43' => 'lonja', 'Lj5A228T42' => 'lonja', 'Lj5A228T43' => 'lonja', 'Lj5A228T47' => 'lonja', 'Lj5C93T11' => 'lonja', 'LjContig00408g0006573' => 'lja', 'LjContig00408g0013541' => 'lja', 'Lsat_1_v5_gn_0_39721' => 'lsa', 'Lsat_1_v5_gn_3_51541' => 'lsa', 'Lsat_1_v5_gn_4_108900' => 'lsa', 'Lsat_1_v5_gn_4_82740' => 'lsa', 'Lsat_1_v5_gn_8_32301' => 'lsa', 'Lsat_1_v5_gn_9_83140' => 'lsa', 'Lsat_1_v5_gn_9_90500' => 'lsa', 'Manes.01G187100' => 'mes', 'Manes.02G085700' => 'mes', 'Manes.05G100000' => 'mes', 'Manes.05G189300' => 'mes', 'Manes.06G094200' => 'mes', 'Manes.06G121500' => 'mes', 'Manes.07G043000' => 'mes', 'Manes.07G043100' => 'mes', 'Manes.10G096200' => 'mes', 'Manes.10G096300' => 'mes', 'Manes.14G049000' => 'mes', 'Manes.14G077000' => 'mes', 'Mapoly0004s0130' => 'mpo', 'Mapoly0033s0128' => 'mpo', 'MBI02_g23679_MAGBIO' => 'mbi', 'MBI05_g35459_MAGBIO' => 'mbi', 'MBI07_g18745_MAGBIO' => 'mbi', 'MBI07_g27871_MAGBIO' => 'mbi', 'MBI11_g24611_MAGBIO' => 'mbi', 'MCO10G379' => 'mco', 'MD00G1186100' => 'mdo', 'MD02G1239000' => 'mdo', 'MD06G1138000' => 'mdo', 'MD06G1191500' => 'mdo', 'MD09G1155500' => 'mdo', 'MD13G1073600' => 'mdo', 'MD14G1153400' => 'mdo', 'MD14G1197900' => 'mdo', 'MD16G1074900' => 'mdo', 'MD17G1141500' => 'mdo', 'Medtr3g099010' => 'mtr', 'Medtr3g452470' => 'mtr', 'Medtr4g093260' => 'mtr', 'Medtr4g093270' => 'mtr', 'Medtr4g093280' => 'mtr', 'Medtr4g093510' => 'mtr', 'Medtr4g108350' => 'mtr', 'Medtr5g039530' => 'mtr', 'Medtr5g091800' => 'mtr', 'Medtr8g096670' => 'mtr', 'MELO3C001971.2' => 'cme', 'MELO3C012085.2' => 'cme', 'MELO3C014461.2' => 'cme', 'MELO3C017165.2' => 'cme', 'MELO3C019696.2' => 'cme', 'MELO3C026192.2' => 'cme', 'Migut.B00537' => 'egut', 'Migut.D01834' => 'egut', 'Migut.I00165' => 'egut', 'Migut.I00170' => 'egut', 'Migut.I00554' => 'egut', 'Migut.L01308' => 'egut', 'Migut.M00583' => 'egut', 'MSTRG.11264' => 'ama', 'MSTRG.15057' => 'ama', 'MSTRG.22896' => 'ama', 'MSTRG.23020' => 'ama', 'MSTRG.6761' => 'ama', 'MSTRG.693' => 'ama', 'MSTRG.9634' => 'ama', 'Nitab4.5_0000021g1030' => 'nta', 'Nitab4.5_0000131g0020' => 'nta', 'Nitab4.5_0000402g0080' => 'nta', 'Nitab4.5_0000574g0010' => 'nta', 'Nitab4.5_0000645g0030' => 'nta', 'Nitab4.5_0000703g0050' => 'nta', 'Nitab4.5_0000771g0040' => 'nta', 'Nitab4.5_0001257g0030' => 'nta', 'Nitab4.5_0001259g0050' => 'nta', 'Nitab4.5_0001402g0090' => 'nta', 'Nitab4.5_0001671g0030' => 'nta', 'Nitab4.5_0002257g0130' => 'nta', 'Nitab4.5_0002364g0040' => 'nta', 'Nitab4.5_0002530g0010' => 'nta', 'Nitab4.5_0002750g0080' => 'nta', 'Nitab4.5_0004485g0030' => 'nta', 'Nitab4.5_0004586g0030' => 'nta', 'Nitab4.5_0004586g0040' => 'nta', 'Nitab4.5_0005908g0030' => 'nta', 'Nitab4.5_0009446g0020' => 'nta', 'Nitab4.5_0012000g0010' => 'nta', 'Nitab4.5_0014595g0010' => 'nta', 'Nn1g05634' => 'nnu', 'Nn1g05636' => 'nnu', 'Nn1g05637' => 'nnu', 'Nn3g17201' => 'nnu', 'Nn4g22253' => 'nnu', 'Nn4g23125' => 'nnu', 'Nn5g29828' => 'nnu', 'Nn6g34415' => 'nnu', 'Oeu019007.1' => 'oeu', 'Oeu019008.1' => 'oeu', 'Oeu023496.1' => 'oeu', 'Oeu035898.2' => 'oeu', 'Oeu042981.1' => 'oeu', 'Oeu043744.1' => 'oeu', 'Oeu047020.2' => 'oeu', 'Oeu054892.1' => 'oeu', 'Oeu060802.1' => 'oeu', 'Oeu063550.2' => 'oeu', 'Os01g0728150' => 'osa', 'Os02g0747500' => 'osa', 'Os06g0226600' => 'osa', 'Os08g0467500' => 'osa', 'Os09g0450600' => 'osa', 'Os11g0498600' => 'osa', 'Os11g0602300' => 'osa', 'Peaxi162Scf00035g03125' => 'pax', 'Peaxi162Scf00085g00530' => 'pax', 'Peaxi162Scf00154g00062' => 'pax', 'Peaxi162Scf00196g00033' => 'pax', 'Peaxi162Scf00274g00835' => 'pax', 'Peaxi162Scf00299g00342' => 'pax', 'Peaxi162Scf00516g00332' => 'pax', 'Peaxi162Scf00541g00623' => 'pax', 'Peaxi162Scf01064g00262' => 'pax', 'Peaxi162Scf01112g00129' => 'pax', 'Peaxi162Scf01414g00014' => 'pax', 'PGR042G1665' => 'pgr', 'PGR044G0311' => 'pgr', 'PGR044G1868' => 'pgr', 'PGR083G0027' => 'pgr', 'PGR083G0921' => 'pgr', 'PGR102G2334' => 'pgr', 'PGSC0003DMG400000600' => 'stu', 'PGSC0003DMG400009332' => 'stu', 'PGSC0003DMG400010683' => 'stu', 'PGSC0003DMG400016187' => 'stu', 'PGSC0003DMG400026482' => 'stu', 'PGSC0003DMG400026483' => 'stu', 'PGSC0003DMG400029015' => 'stu', 'PGSC0003DMG401026939' => 'stu', 'PGSC0003DMG401030146' => 'stu', 'PGSC0003DMG402023061' => 'stu', 'Phvul.002G086700' => 'pvu', 'Phvul.002G214600' => 'pvu', 'Phvul.003G066800' => 'pvu', 'Phvul.003G191100' => 'pvu', 'Phvul.006G034700' => 'pvu', 'Phvul.008G183100' => 'pvu', 'Phvul.008G190500' => 'pvu', 'Phvul.009G164101' => 'pvu', 'Phvul.009G188300' => 'pvu', 'Potri.001G006000' => 'ptr', 'Potri.001G283000' => 'ptr', 'Potri.005G152100' => 'ptr', 'Potri.009G078500' => 'ptr', 'Potri.012G069300' => 'ptr', 'Potri.012G101600' => 'ptr', 'Potri.014G148600' => 'ptr', 'Potri.015G062800' => 'ptr', 'Potri.015G099700' => 'ptr', 'Potri.017G139000' => 'ptr', 'Pp3c13_20960' => 'ppa', 'Pp3c13_20961' => 'ppa', 'Pp3c13_20970' => 'ppa', 'Pp3c26_3490' => 'ppa', 'Pp3c26_3510' => 'ppa', 'Pp3c3_14030' => 'ppa', 'Pp3c4_23200' => 'ppa', 'Prupe.1G272400' => 'ppe', 'Prupe.1G535200' => 'ppe', 'Prupe.3G170400' => 'ppe', 'Prupe.5G148300' => 'ppe', 'Prupe.5G190000' => 'ppe', 'Prupe.8G072500' => 'ppe', 'Prupe.8G072600' => 'ppe', 'Prupe.8G072900' => 'ppe', 'Prupe.8G073000' => 'ppe', 'Prupe.8G228800' => 'ppe', 'Prupe.8G229300' => 'ppe', 'Psat0s1339g0040' => 'psa', 'Psat2g064560' => 'psa', 'Psat2g065480' => 'psa', 'Psat2g121240' => 'psa', 'Psat4g052200' => 'psa', 'Psat5g052360' => 'psa', 'Psat5g185280' => 'psa', 'Psat7g036880' => 'psa', 'Psat7g102080' => 'psa', 'Psat7g102120' => 'psa', 'Psat7g102160' => 'psa', 'PSO017G0404' => 'pso', 'PSO017G1572' => 'pso', 'PSO017G3790' => 'pso', 'PSO017G5630' => 'pso', 'PSO063G5325' => 'pso', 'PSO478G0327' => 'pso', 'PSO478G3566' => 'pso', 'PSO478G4771' => 'pso', 'PSO541G5206' => 'pso', 'PSO675G5042' => 'pso', 'PSO832G4594' => 'pso', 'QL03p064574' => 'qlo', 'QL03p065208' => 'qlo', 'QL08p043741' => 'qlo', 'QL08p047808' => 'qlo', 'QL09p018396' => 'qlo', 'QL10p002358' => 'qlo', 'QL10p016467' => 'qlo', 'QL11p025811' => 'qlo', 'QL11p025817' => 'qlo', 'QL11p025833' => 'qlo', 'QL11p025849' => 'qlo', 'QL11p029380' => 'qlo', 'QL11p029412' => 'qlo', 'RcHm_v2.0_Chr1g0373191' => 'rch', 'RcHm_v2.0_Chr2g0150951' => 'rch', 'RcHm_v2.0_Chr2g0150981' => 'rch', 'RcHm_v2.0_Chr4g0440041' => 'rch', 'RcHm_v2.0_Chr6g0270081' => 'rch', 'RcHm_v2.0_Chr6g0270121' => 'rch', 'RcHm_v2.0_Chr6g0270151' => 'rch', 'RcHm_v2.0_Chr6g0270161' => 'rch', 'RcHm_v2.0_Chr6g0270171' => 'rch', 'RcHm_v2.0_Chr6g0270181' => 'rch', 'RcHm_v2.0_Chr6g0270191' => 'rch', 'RcHm_v2.0_Chr7g0180981' => 'rch', 'RcHm_v2.0_Chr7g0189711' => 'rch', 'RcHm_v2.0_Chr7g0234881' => 'rch', 'Rhsim05G0206100' => 'rsi', 'Rhsim06G0070000' => 'rsi', 'Rhsim06G0121100' => 'rsi', 'Rhsim08G0157100' => 'rsi', 'Rhsim08G0192000' => 'rsi', 'Rhsim11G0141100' => 'rsi', 'Rhsim11G0141200' => 'rsi', 'Rhsim11G0141300' => 'rsi', 'Rhsim12G0157200' => 'rsi', 'Rhsim12G0169900' => 'rsi', 'Rhsim12G0176700' => 'rsi', 'Sabra01G0004400' => 'sbr', 'Sabra05G0119100' => 'sbr', 'Sabra09G0060100' => 'sbr', 'Sabra12G0049400' => 'sbr', 'Sabra12G0074500' => 'sbr', 'Sabra12G0074600' => 'sbr', 'Sabra15G0088100' => 'sbr', 'Sabra15G0120400' => 'sbr', 'Sabra16G0176200' => 'sbr', 'Sabra16G0176300' => 'sbr', 'Sabra16G0177000' => 'sbr', 'Sabra17G0113500' => 'sbr', 'Sabra19G0092700' => 'sbr', 'SalBow5G0220' => 'sbo', 'SalBow5G1247' => 'sbo', 'SalBow5G3841' => 'sbo', 'SalBow6G1286' => 'sbo', 'SalBow7G0203' => 'sbo', 'SalBow8G3109' => 'sbo', 'Sc01g0003920' => 'sci', 'Sc04g0000490' => 'sci', 'Sc11g0001830' => 'sci', 'Sc12g0006270' => 'sci', 'Sed0004869' => 'sed', 'Sed0009801' => 'sed', 'Sed0011464' => 'sed', 'Sed0014271' => 'sed', 'Sed0018044' => 'sed', 'Sed0019025' => 'sed', 'Sed0019880' => 'sed', 'Sed0022398' => 'sed', 'Sed0023075' => 'sed', 'SEGI_09879' => 'sgi', 'SEGI_20048' => 'sgi', 'SGA_v2.0_scaffold207G41870' => 'sas', 'SGA_v2.0_scaffold83G26387' => 'sas', 'SGA_v2.0_scaffold9G04904' => 'sas', 'SMO169G0069' => 'smo', 'SMO351G0661' => 'smo', 'SMO358G0167' => 'smo', 'SMO358G0592' => 'smo', 'Solyc01g106070.2' => 'sly', 'Solyc03g097420.3' => 'sly', 'Solyc03g116350.3' => 'sly', 'Solyc04g014420.4' => 'sly', 'Solyc04g076610.3' => 'sly', 'Solyc05g007300.3' => 'sly', 'Solyc06g072680.4' => 'sly', 'Solyc10g007820.3' => 'sly', 'Solyc10g047670.2' => 'sly', 'Solyc11g010930.2' => 'sly', 'Sopen00g012160' => 'spe', 'Sopen03g028180' => 'spe', 'Sopen03g035280' => 'spe', 'Sopen04g006560' => 'spe', 'Sopen05g003250' => 'spe', 'Sopen06g029050' => 'spe', 'Sopen10g003720' => 'spe', 'Sopen10g018090' => 'spe', 'Sopen11g005670' => 'spe', 'Sp2g25670' => 'spa', 'Sp4g24940' => 'spa', 'Sp5g24830' => 'spa', 'Sp5g29700' => 'spa', 'Sp6g12800' => 'spa', 'Sp7g22940' => 'spa', 'TAR231G0003' => 'tar', 'TAR371G0003' => 'tar', 'TAR371G0681' => 'tar', 'TAR374G0187' => 'tar', 'TAR381G0504' => 'tar', 'TAR625G0266' => 'tar', 'TAR625G0371' => 'tar', 'TAR625G0784' => 'tar', 'TAR625G0834' => 'tar', 'TAR625G1453' => 'tar', 'TAR626G0008' => 'tar', 'TAR627G0660' => 'tar', 'TAR629G1090' => 'tar', 'THA.LOC104802270' => 'tha', 'THA.LOC104810631' => 'tha', 'THA.LOC104811578' => 'tha', 'THA.LOC104813878' => 'tha', 'THA.LOC104819441' => 'tha', 'THA.LOC104822919' => 'tha', 'Thecc.01G160000' => 'tca', 'Thecc.02G127100' => 'tca', 'Thecc.02G350200' => 'tca', 'Thecc.03G084100' => 'tca', 'Thecc.03G132800' => 'tca', 'Thecc.08G073600' => 'tca', 'Thhalv10005590m.g' => 'esa', 'Thhalv10015050m.g' => 'esa', 'Thhalv10015419m.g' => 'esa', 'Thhalv10017357m.g' => 'esa', 'Thhalv10019205m.g' => 'esa', 'Thhalv10019224m.g' => 'esa', 'Thhalv10026521m.g' => 'esa', 'TPR.G12628' => 'tpr', 'TPR.G12837' => 'tpr', 'TPR.G16877' => 'tpr', 'TPR.G18351' => 'tpr', 'TPR.G20268' => 'tpr', 'TPR.G21955' => 'tpr', 'TPR.G2867' => 'tpr', 'TPR.G30873' => 'tpr', 'TPR.G34507' => 'tpr', 'TPR.G34737' => 'tpr', 'TPR.G35142' => 'tpr', 'TPR.G36043' => 'tpr', 'TPR.G37087' => 'tpr', 'TPR.G39954' => 'tpr', 'TWI14G0262' => 'twi', 'TWI14G0488' => 'twi', 'TWI18G0204' => 'twi', 'TWI39G0258' => 'twi', 'TWI39G0404' => 'twi', 'TWI56G0415' => 'twi', 'TWI59G0327' => 'twi', 'TWI60G1427' => 'twi', 'TWI81G0650' => 'twi', 'unitig_21.g20461' => 'ugi', 'unitig_37.g12856' => 'ugi', 'unitig_52.g17498' => 'ugi', 'unitig_8.g3027' => 'ugi', 'vmacro01871' => 'vma', 'vmacro01872' => 'vma', 'vmacro01873' => 'vma', 'vmacro01878' => 'vma', 'vmacro12163' => 'vma', 'vmacro12444' => 'vma', 'vmacro16555' => 'vma', 'vmacro16686' => 'vma', 'vmacro17556' => 'vma', 'vmacro19129' => 'vma', 'vmacro21359' => 'vma', 'vmacro22873' => 'vma', 'vmacro23413' => 'vma', 'VMungo0251G0586' => 'vmu', 'VMungo0251G2483' => 'vmu', 'VMungo0540G1363' => 'vmu', 'VMungo0647G0535' => 'vmu', 'VMungo0647G2271' => 'vmu', 'VMungo1215G1441' => 'vmu', 'VMungo1215G1738' => 'vmu', 'VMungo1215G1759' => 'vmu', 'VMungo1309G2258' => 'vmu', 'Zm00001eb037890' => 'zma', 'Zm00001eb092150' => 'zma', 'Zm00001eb100630' => 'zma', 'Zm00001eb112930' => 'zma', 'Zm00001eb154270' => 'zma', 'Zm00001eb167300' => 'zma', 'Zm00001eb254850' => 'zma', 'Zm00001eb265300' => 'zma', 'Zm00001eb279570' => 'zma', 'Zm00001eb357770' => 'zma', 'Zm00001eb361840' => 'zma', 'Zm00001eb372500' => 'zma', 'Zm00001eb379710' => 'zma' ) $gf_id = 'HOM05D000650' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000650' ) $data_identifier = 'HOM05D000650' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 16, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 42, 'arhy' => (int) 14, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 10, 'cqu' => (int) 7, 'bca' => (int) 16, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 11, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 11, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 11, 'gma' => (int) 20, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 16, 'han' => (int) 9, 'cav' => (int) 17, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 12, 'mpo' => (int) 2, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 7, 'nta' => (int) 22, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 7, 'pax' => (int) 11, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 11, 'qlo' => (int) 13, 'rch' => (int) 14, 'rsi' => (int) 11, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 3, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 13, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 14, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 13, 'vmu' => (int) 9, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb379710' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1